rs29897000 SNP Detail

Summary

• ID
  rs29897000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34307911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGTATG TGACTATCCA
  GATGACTAAT TAATTCTAAT GAATAGTCCT TTCCTTCTGT CTGATGAGTG CCAGGCAGTA
  TGTACACCAG ATGTGAAACA TACTGAAACA TAAAGCAGGC AACACACATG TTTTCTTGCA
  ACCCAAGGCA TTAAGCAAAA GGATCAAGCT TTCCACAGAC CACCAAAATA GGATGGAAAA
  Y
  CATGAGCACT CAAAAGACAT TTGTTCTCAT TCATTCATTC ATTCATTCAT TCATTTGAGA
  AGATAGTGCC TGACTCACAG ACTGCCCACT GACCCATGCC CCACTCTCTA CCCAGTGGTG
  CTTCCCTGTT GTAGAGCTAA GAACACATGT ACACACAAAT CCATGTTCTT TCAGACTGCG
  GCTGCAGGGG CATCTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss49577616	NES12873410	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs29897000					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577616	NES12873410	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34307911 () rs orientation: forward

Symbol	Name	Function Class
Gm52623	predicted gene, 52623	656 bp downstream
Rr80429	regulatory region 80429	112 bp distal