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rs29897321 SNP Detail
Summary
  • ID
    rs29897321
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr10:70567561 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAATAAAAAG GGGACAATAT
    AGAAGTAGGA TGCATATAAA TTGCTTAATT AGTGGGGATT TATTCCACAA ATATTTGTTG
    GGCCCAGATT ATTTACCAAG CTACACTGCA AAAGAGTAAG ACCAGTATCC CGGCAAAAAT
    CACAAGGATG CTTTCTTGTT CTCCTTCACC ACAGGTAGGC CCATCCCTGA GCCTCCTGTG
    K
    CCAAAGACTT CTAGGGGACA AGAAACCTCA GCTGTTTCTT CTGCTACTGG TCCAGCTTCT
    AGGCCTTTGG GATTGCTATT CAGACCAGTG CCCTTGACCT CTAGAAGGGT CTAAAGATTA
    TTTCAAGAGA GGGAGGTTTA CCTCCGCTTG TCTGGTAATA CCAAACCAGT AACAAACCAT
    GGGAATTTGT ACTTTGAATG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47891421 NES11926654 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T G T G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs29897321 SNP T T T T T T T T T G T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47891421 NES11926654 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:70567561 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm33979 predicted gene, 33979 within coordinates
Rr220222 regulatory region 220222 1840 bp proximal
Rr384898 regulatory region 384898 1750 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory