rs29897725 SNP Detail

Summary

• ID
  rs29897725
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33124693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCATCCTG AGCCAGGTCC
  CAAACCTACC AGAGTAGCTG CTCCTCATTG TAGCCTTTTC AGCCTGGATG TCCCTTGTAG
  CTTAACACAG CAGCCTTCCA GATTCAGCTG ACCCCTTTAT TCATTCACTT CAGGGCAGGG
  ACTTCCTGTT TAGTGTCTCT GGCTACCTAC AGTGAAACTG GCTTCCTCTA GCTCTGGCCT
  M
  TGCAAGAAGA GGACTGGTGG CAAATCTAGG TCTTTAGAGA AAACAAAAAA AAAACAGGAG
  CTTTTGCTGT GTGCCAAAGG AGAATCTATG CAGGATTTTA ATAGCTCTCT GGGGTTCAAG
  TGGGGGATGT GGGATGTGGA GGGTGCCCAG TATCTGTTGA CAATCCATAA CTCCAGGGTG
  GACTACTAAG CCCTGCAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49079912	NES12435068	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29897725					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079912	NES12435068	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33124693 () rs orientation: forward

Symbol	Name	Function Class
Rr476936	regulatory region 476936	1162 bp distal
Tssr122016	transcription start site region 122016	1380 bp upstream
Tssr122017	transcription start site region 122017	88 bp upstream
Tssr122018	transcription start site region 122018	72 bp upstream