rs29897729 SNP Detail

Summary

• ID
  rs29897729
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33124325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCAGATG TTTAAAAGGC
  CCCAATATAA GAGAATTTGC ATTTATAAGA AATGAGGAGA GAAAGATAAG GCAGTCAAAT
  TGTCAACTGT AGACACTGAG AAGAAGCCGG GAAGGAGGCC TGTGGAGAGG CTGCTACCAC
  CTTGCAGCAC CCAGACCTGA CTAGAGGAGG AGCCAACACA GCCTAGATCT CCAGTTCCAG
  K
  ATCAGCCTCC CTGACACTGA CCAGCTGGGA TTCCTAGTAG AGTCTCCTTT TTAAAATGCC
  CATCACATAC CACCTCCCAG CTCTCTCTTT CCCTAATTCT ATGGTCCTGT GTTTCCCTCC
  TGGATTCAGC CTTCACATTA TAAAACTGAC CGCTGTGAGT CCCATAGCCC CATCCTGAGC
  CAGGTCCCAA ACCTACCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49079917	NES12435063	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29897729					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079917	NES12435063	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33124325 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	1651 bp upstream
Rr476935	regulatory region 476935	1721 bp distal
Rr476936	regulatory region 476936	794 bp distal
Tssr122016	transcription start site region 122016	1012 bp upstream
Tssr122017	transcription start site region 122017	244 bp downstream
Tssr122018	transcription start site region 122018	283 bp downstream