rs29897731 SNP Detail

Summary

• ID
  rs29897731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33124271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGAACT GTTTTATAAA
  TGGGAATGTG CAGTGCTCAA ATTTAGACTA GAGACCCCCA GATGTTTAAA AGGCCCCAAT
  ATAAGAGAAT TTGCATTTAT AAGAAATGAG GAGAGAAAGA TAAGGCAGTC AAATTGTCAA
  CTGTAGACAC TGAGAAGAAG CCGGGAAGGA GGCCTGTGGA GAGGCTGCTA CCACCTTGCA
  R
  CACCCAGACC TGACTAGAGG AGGAGCCAAC ACAGCCTAGA TCTCCAGTTC CAGGATCAGC
  CTCCCTGACA CTGACCAGCT GGGATTCCTA GTAGAGTCTC CTTTTTAAAA TGCCCATCAC
  ATACCACCTC CCAGCTCTCT CTTTCCCTAA TTCTATGGTC CTGTGTTTCC CTCCTGGATT
  CAGCCTTCAC ATTATAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49079919	NES12435061	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29897731					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079919	NES12435061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33124271 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	1597 bp upstream
Rr476935	regulatory region 476935	1667 bp distal
Rr476936	regulatory region 476936	740 bp distal
Tssr122016	transcription start site region 122016	958 bp upstream
Tssr122017	transcription start site region 122017	298 bp downstream
Tssr122018	transcription start site region 122018	337 bp downstream