rs29897732 SNP Detail

Summary

• ID
  rs29897732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33124257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTGTCA GCATGGAGTG
  AACTGTTTTA TAAATGGGAA TGTGCAGTGC TCAAATTTAG ACTAGAGACC CCCAGATGTT
  TAAAAGGCCC CAATATAAGA GAATTTGCAT TTATAAGAAA TGAGGAGAGA AAGATAAGGC
  AGTCAAATTG TCAACTGTAG ACACTGAGAA GAAGCCGGGA AGGAGGCCTG TGGAGAGGCT
  R
  CTACCACCTT GCAGCACCCA GACCTGACTA GAGGAGGAGC CAACACAGCC TAGATCTCCA
  GTTCCAGGAT CAGCCTCCCT GACACTGACC AGCTGGGATT CCTAGTAGAG TCTCCTTTTT
  AAAATGCCCA TCACATACCA CCTCCCAGCT CTCTCTTTCC CTAATTCTAT GGTCCTGTGT
  TTCCCTCCTG GATTCAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49079920	NES12435059	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29897732					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079920	NES12435059	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33124257 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	1583 bp upstream
Rr476935	regulatory region 476935	1653 bp distal
Rr476936	regulatory region 476936	726 bp distal
Tssr122016	transcription start site region 122016	944 bp upstream
Tssr122017	transcription start site region 122017	312 bp downstream
Tssr122018	transcription start site region 122018	351 bp downstream