rs29898398 SNP Detail

Summary

• ID
  rs29898398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52940585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGCACT AGTGCACTAC
  AGACACACCA TAAATCCGAT CGACTGGAAT GCAAGCTCTG AATATCTTCG TGGGAACAAG
  GCCATGACTA GCAGGCATCT TAACTGGAAC TGGCTGCCAG GTAACAGCAA GATAAACACA
  GCATGGTGCA TTGCTGGTGC AGCTGCCCGG TGTGGATTTG GGGGTTCATC CCGTGAGCTA
  Y
  GCCATGCAGT GTGCTGAGCA GCAGCATTGG GATATGAGAG CCAATGAGGA GCCTCTGAGA
  GAGTGTTCAA TGCACAGTAA AGGGTGACAC GATCACACTG AAGAGACACA GTTGAAGTCA
  GGCTCCAGTC ATAGATTTAA ACACCAGCAC AAAGGCAGAC CTTGAGTGGA CACCCTTTAT
  GGCTACAGTC AAATTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47892628	NES11645673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29898398					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47892628	NES11645673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52940585 () rs orientation: forward

Symbol	Name	Function Class
Gm33219	predicted gene, 33219	1558 bp downstream
Jazf1	JAZF zinc finger 1	within coordinates
Rr630519	regulatory region 630519	402 bp distal
Rr630520	regulatory region 630520	370 bp proximal
Rr630521	regulatory region 630521	1629 bp proximal
Tssr61049	transcription start site region 61049	1861 bp upstream