rs29898525 SNP Detail

Summary

• ID
  rs29898525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32920435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCTACT GCCTGTTAGC
  CTGTGAACTG AACTGTCAAC AGACAACACA GACAGGAATT GCTCCAAAGA ACCTTTCTAA
  ACAGTTCCAC TTCTCCTGTA TCCTTTCTTT TCCACTACCT CTGGTGGGTA GTGGGCTACA
  AGAGAACCAA CATTAAAAAT AGGATTTGAA AAATTAAAGT TACAGAGAAT GCAGAATCCT
  Y
  ATGTGTTTCC CTCAGACGAT AACTTCTGCA TGCCACCCCA CCTCCACATC TGCCTTCTTT
  TGCTCCAAAA AAAAAAAAAA AAAAAATCTT GGCTCTGAAT GCCAGGTCCC TGCTCCTAAC
  TGCTCTAATA AAAGTGGTAG TAGAGGAGGT TGGTCTCAGA CCCCGAAGTC CTCTTAACCT
  TACTCACAGT TGTGTGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49080511	NES12441729	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29898525					SNP	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080511	NES12441729	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32920435 () rs orientation: forward

Symbol	Name	Function Class
Mylk4	myosin light chain kinase family, member 4	within coordinates
Rr271368	regulatory region 271368	966 bp proximal
Rr278925	regulatory region 278925	1660 bp distal