rs29898527 SNP Detail

Summary

• ID
  rs29898527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32916600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAATCAA TTCTAAAATG
  GATTTAACCT TAACCATTAC TGTAAAAGTG GAACTCCACT AGACCTCCAT TGTGTTGTTG
  GGCCACTGTC CTCCAACTGG GATATAAAGT GTTCTATTTT GGTTTCTCTA GCACTTGAAT
  GAGAGAATTT AGGGCTCTAA AAACTCCCAG GAAAGCAAGG TGCAGTGAAG GGAAGAAGCG
  Y
  ATGCAGAAAT GGGTCTATCA GTGTGGGAGT GTTCTGCTAT TAGGCTGTGT CACGGGAAAG
  CGAGGCTTCC CTGGGGACCA TCTTGGAGCA TCCCTGACAC TCATATCCAT TGCTTTACTT
  CAGAACAAAA TGTTATATGA CAATTATATC CCTGCATTTG GGGATTAGTT ACTTCAGAAA
  AGAAATCTGT CCTGGGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	FVB/NJ	MOLF/EiJ
ss49080513	NES12441989	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	FVB/NJ	MOLF/EiJ
rs29898527					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080513	NES12441989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32916600 () rs orientation: forward

Symbol	Name	Function Class
Mylk4	myosin light chain kinase family, member 4	within coordinates
Rr271367	regulatory region 271367	800 bp distal
Rr278924	regulatory region 278924	858 bp distal
Rr278925	regulatory region 278925	1683 bp proximal