rs29898594 SNP Detail

Summary

• ID
  rs29898594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33123646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGTCTG TTTCAGAGTG
  CATGGTACTG TGCTAAAATA CAGATCAAAA GCCCAGGGAG CCTCAGGACA CCTCAACCCA
  TGCTTCTTCC TACTCTTCAG ACAGACGGGC ACAGCATCCT GAGAGTGTAC TTAGATCCTC
  TGGGTCCTCC CCTGAAGTCT CCCAGGGCTC TGAGGGAAAG GTGGGGCTGC TTTATATCAA
  R
  TGAATTACCC TCTGGTTGGT CCTCTCATCA GACCCAGCTT GCCCCTTCTC CTGCATTCCT
  GCCTATCCTT ATGTCACTTT AAAGTTGCTT CTGAGTCCTT TGAAGTGCTG TTGACTTCAC
  CTAGAAGTTC TCCTACCCTA TCCCTGTCAC TGAGTTCAAA CTCCTCACCG TTCCTAACTT
  CACCGGAACA GGAAAGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49079922	NES12435054	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29898594					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079922	NES12435054	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33123646 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	972 bp upstream
Rr476935	regulatory region 476935	1042 bp distal
Rr476936	regulatory region 476936	115 bp distal
Tssr122016	transcription start site region 122016	333 bp upstream
Tssr122017	transcription start site region 122017	923 bp downstream
Tssr122018	transcription start site region 122018	962 bp downstream