rs29898595 SNP Detail

Summary

• ID
  rs29898595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33123567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTACTGT GCTAAAATAC AGATCAAAAG CCCAGGGAGC
  CTCAGGACAC CTCAACCCAT GCTTCTTCCT ACTCTTCAGA CAGACGGGCA CAGCATCCTG
  R
  GAGTGTACTT AGATCCTCTG GGTCCTCCCC TGAAGTCTCC CAGGGCTCTG AGGGAAAGGT
  GGGGCTGCTT TATATCAAGT GAATTACCCT CTGGTTGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49079923	NES12435052	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	G	A	G		G	A	G	G		G
ss148851143	ENSMUSSNP2799139	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss324312366	CHEV_13_33031453	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29898595					SNP	A	A	G	G	G	G	G	A	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079923	NES12435052	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33123567 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	893 bp upstream
Rr476935	regulatory region 476935	963 bp distal
Rr476936	regulatory region 476936	36 bp distal
Tssr122016	transcription start site region 122016	254 bp upstream
Tssr122017	transcription start site region 122017	1002 bp downstream
Tssr122018	transcription start site region 122018	1041 bp downstream