rs29898599 SNP Detail

Summary

• ID
  rs29898599
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33123184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTCTGA AGAATGTTGA
  GCTTTGGCTA AAGAGAAGGA GGAAGAGAAG AGGAAGCAAG GAAGAAAACA GACAGGAGCA
  TCTAGGTCTT CTAGCCTGCC TTCGGCAACT CTGCATTCTG GACTCTGCCT GTGAATAAGT
  CTCCTGAGAT ACCCAGGGGT GCATTAGATG GTGCCCATTT GCAGTTAGAC AGGAAAGACA
  M
  TGAGATCCTG AATGAGACCC AAAGACAGGC TGGTGTTATC AACTCTGTTG TGTAGCAGGG
  AGCATTTCCC TGCAGTGACT GCTCAGGGGA CCTTGTATCC TCTGAAGGCA CCCAGGCTGC
  TTTTCTCTTG AGCATGCCTC AGCTTCCAGA TAAATGGAAA GCTTGGCCCA GACTACGTCA
  CTACTCCAGA TGCCTTAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49079928	NES12435041	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29898599					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079928	NES12435041	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33123184 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	510 bp upstream
Rr476935	regulatory region 476935	580 bp distal
Rr476936	regulatory region 476936	9 bp proximal
Tssr122016	transcription start site region 122016	118 bp downstream
Tssr122017	transcription start site region 122017	1385 bp downstream
Tssr122018	transcription start site region 122018	1424 bp downstream