rs29899085 SNP Detail

Summary

• ID
  rs29899085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13303174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATGTGT GTCTGCTCTA
  TTTAGAGACA CGGCATTGGT GGCATTCCTA TACAGTGACC ACAGAACTAA GCTGGGCGTG
  CTCACGACAG ACGGACAGAG CAGGGAATGC GTATGTGGGG TCTGTTGGCT CAACTGCTGG
  CCTCAGGCCT CAGTTTTGCA ACGATGGCAT GCCAGACCTG CAGGGTATTA CCATCACACT
  R
  TGTCGAGAAA AGACACACGG CGCTTGTATA TGGGCGCGTC TCTGAAATCC AGGTAACATT
  TTGTTGATTT TAGCTCCTTA GGAAACAAGC TTTGTTCTTC CATGTCCAAA ACTCTTCCTT
  AGACAATTTA CTCATAAATT ACGCCCAAAC TGGATCGCTC GGACAGACAG CTCAACCTTA
  ATTATTTGGA TCGGAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394425	NES11492511	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		A	G	A	A		G
ss322505535	CHEV_8_13253174	CHEVERUD	SCREENING_POP	f	SNP							G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29899085					SNP	A	G	G	G	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394425	NES11492511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13303174 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Rr175514	regulatory region 175514	827 bp proximal
Rr186316	regulatory region 186316	within coordinates
Tssr80430	transcription start site region 80430	858 bp downstream
Tssr80431	transcription start site region 80431	894 bp downstream
Tssr80432	transcription start site region 80432	930 bp downstream
Tssr80433	transcription start site region 80433	947 bp downstream
Tssr80434	transcription start site region 80434	980 bp downstream
Tssr80435	transcription start site region 80435	1002 bp downstream
Tssr80436	transcription start site region 80436	1072 bp downstream