rs29899088 SNP Detail

Summary

• ID
  rs29899088
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13303331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACGATGG CATGCCAGAC
  CTGCAGGGTA TTACCATCAC ACTGTGTCGA GAAAAGACAC ACGGCGCTTG TATATGGGCG
  CGTCTCTGAA ATCCAGGTAA CATTTTGTTG ATTTTAGCTC CTTAGGAAAC AAGCTTTGTT
  CTTCCATGTC CAAAACTCTT CCTTAGACAA TTTACTCATA AATTACGCCC AAACTGGATC
  K
  CTCGGACAGA CAGCTCAACC TTAATTATTT GGATCGGAGA TGCCACCCCC AAACAATGTT
  ATCTCAGTGG GCCCACATTT CAAGCTCTTC TTTATAGACT TAGAATAAGA TGCTCAGCCT
  CTGCAGTGCA CCTATGTCTG TCTGTGCTTT GTCTCCCCCA CCCCTGCCCC GCCCTGCAGA
  GCAGCTCCTA GAGGGTTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47394428	NES11492512	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29899088					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394428	NES11492512	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13303331 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Rr175514	regulatory region 175514	670 bp proximal
Rr186316	regulatory region 186316	within coordinates
Tssr80430	transcription start site region 80430	701 bp downstream
Tssr80431	transcription start site region 80431	737 bp downstream
Tssr80432	transcription start site region 80432	773 bp downstream
Tssr80433	transcription start site region 80433	790 bp downstream
Tssr80434	transcription start site region 80434	823 bp downstream
Tssr80435	transcription start site region 80435	845 bp downstream
Tssr80436	transcription start site region 80436	915 bp downstream