rs29899091 SNP Detail

Summary

• ID
  rs29899091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13304145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCTGTTC TCCCTGCAGA
  TGTTTCCATA GCCGAGGGCA TCTCCAACAC TCCCCAACAG CATTGCAGCC TTGAACTTCT
  CCATCTTGGA AGGTGACCCC TCTTACCCTG CGGTTGCCTT TGTCCTCTCC TGGCCACCCT
  TAGCCAGCCC CGCTGACATT TATACTGGTC ATTGTATCAC CATCCAGCAC TCTCCAAATG
  R
  CCAGGCGTTC CTTCCCTGCC TTGGCAGGTG GCACCAATGA GATAAAGGCT CAGAGCTCAC
  CACGTGGGAG CTGTTTGGGA CACGCTGGCT CTCCAGCAAA GGAGTCTGCT GGCACCAGTG
  TACACCCAGC CAGCTCAGCC CAGCTCAGAG CCCGTGAGCT GTGCTACTCT GTCAGCACCT
  TGGTGAGTTG TGCCCCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394431	NES11492513	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A		G	A	G	G		A
ss322505544	CHEV_8_13254145	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29899091					SNP	A	A	A	A	A	G	A	A	A	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394431	NES11492513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13304145 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Dcun1d2	defective in cullin neddylation 1 domain containing 2	1818 bp downstream
Rr175514	regulatory region 175514	within coordinates
Rr186316	regulatory region 186316	within coordinates
Tssr80430	transcription start site region 80430	102 bp upstream
Tssr80431	transcription start site region 80431	60 bp upstream
Tssr80432	transcription start site region 80432	26 bp upstream
Tssr80433	transcription start site region 80433	within coordinates
Tssr80434	transcription start site region 80434	9 bp downstream
Tssr80435	transcription start site region 80435	31 bp downstream
Tssr80436	transcription start site region 80436	101 bp downstream