rs29899438 SNP Detail

Summary

• ID
  rs29899438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32911249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGATCCT GATGCTGAAT
  TTCCAAGGAT TCCTGGTGTA GAAGTGGTCT TTATATTACT GATGCACCTG GAAAATAGAA
  TACATTTGCA GTTTTCAAAG ATTCAAGGGA AAATGTTCAG ATTGTCAAAA TGCTTTGGGA
  ACCAATACTT TCTCATGACA GTGTCTGGGG AAGACAATGT GCTCTGTGAT GTGAAGACAA
  S
  CAGTCTAGCA GTTGAGGACA TCAAATCTAG GAAGATCCAG ACACAGAGAG TCTTCCAGAG
  ACCCAACTAT GAGCCCTAAA GTGGTCATTT AGGAAACTTA ATAAAAGAAA ATAAATTATA
  GAAAAGAAGC AATAACCTCT CAAGATTGAC AGCCACAGAA GAACCATTAT TTGTGGAAGA
  ATTATCTTAA CTAGCATGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49080524	NES12442293	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29899438					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080524	NES12442293	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32911249 () rs orientation: forward

Symbol	Name	Function Class
2310045N14Rik	RIKEN cDNA 2310045N14 gene	294 bp upstream
Mylk4	myosin light chain kinase family, member 4	within coordinates