rs29900044 SNP Detail

Summary

• ID
  rs29900044
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13304388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGCTCA GAGCTCACCA
  CGTGGGAGCT GTTTGGGACA CGCTGGCTCT CCAGCAAAGG AGTCTGCTGG CACCAGTGTA
  CACCCAGCCA GCTCAGCCCA GCTCAGAGCC CGTGAGCTGT GCTACTCTGT CAGCACCTTG
  GTGAGTTGTG CCCCCTGCTG GCAGAGCGAC ATACCACAAT GAGAACATAC TGCTCCATCC
  S
  GGTTCCTTGA CCATCTGCTC TGCCCTACCT TCAGACAGAC ACACTCCTTT TGCCCCTTCT
  TGTCTGCCCT CTTTCACTCA GCATAAAACT GAGGCCCACC CATTGTAGTT TTATGCTTTT
  AGAAAACTTT TCTGGCTGGG CAGTGGTGAT ACACGCCTCT AGTTTCAGCA TTCAGCATTC
  AGGAGGCAGG GGCAGGTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394434	NES11492514	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		G	C	G	C		C
ss322505547	CHEV_8_13254388	CHEVERUD	SCREENING_POP	f	SNP								C					G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29900044					SNP	C	C	C	C	C	C	C	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394434	NES11492514	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13304388 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	226 bp upstream
Dcun1d2	defective in cullin neddylation 1 domain containing 2	1575 bp downstream
Rr175514	regulatory region 175514	within coordinates
Rr186316	regulatory region 186316	187 bp distal
Tssr80430	transcription start site region 80430	345 bp upstream
Tssr80431	transcription start site region 80431	303 bp upstream
Tssr80432	transcription start site region 80432	269 bp upstream
Tssr80433	transcription start site region 80433	238 bp upstream
Tssr80434	transcription start site region 80434	220 bp upstream
Tssr80435	transcription start site region 80435	200 bp upstream
Tssr80436	transcription start site region 80436	119 bp upstream