rs29900053 SNP Detail

Summary

• ID
  rs29900053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13305129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTAGTG ATGCGTGTCT
  ATACAAACAA ACTTCACTTG TTGTAAACAT CACTGCCTGC TCATGGAATT ATTAAATAAT
  GAGGATGGAT AGGTGCACTT TATAAAGCCA GGCTTCTTGG TTTGAAATGA CCTAGGTCAA
  CCACCTCCCT ATACCCTGTC TCAAGCACAA ACCTTGCAGC CTCAGACATT GCTGGCCCTC
  Y
  TGTGACGTAA ATCTGTCACC CAGAATTGGC AGTGCATCAC TTGGACTTAG AATACAATTG
  GAAAGAACTT TAGTGTGTAA CAAGACGCCC TTCCTGCTGG CCCAACTCTC AGTCTGAAGC
  AGTCCCACAA ATCCAGAAGG TACATAGCTC CCATCCAGAC AGACAAACAG CAGAAGCCAG
  CAGGAGCCAG CTCCCACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394443	NES11492379	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	C	C		T
ss322505552	CHEV_8_13255129	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29900053					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394443	NES11492379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13305129 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	967 bp upstream
Dcun1d2	defective in cullin neddylation 1 domain containing 2	834 bp downstream
Rr175514	regulatory region 175514	529 bp distal
Rr186316	regulatory region 186316	928 bp distal
Tssr80430	transcription start site region 80430	1086 bp upstream
Tssr80431	transcription start site region 80431	1044 bp upstream
Tssr80432	transcription start site region 80432	1010 bp upstream
Tssr80433	transcription start site region 80433	979 bp upstream
Tssr80434	transcription start site region 80434	961 bp upstream
Tssr80435	transcription start site region 80435	941 bp upstream
Tssr80436	transcription start site region 80436	860 bp upstream