rs29900278 SNP Detail

Summary

• ID
  rs29900278
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23989867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACC GAAATAAAAC TCAGGGGTTT
  K
  CCATGTTGTA TTTTGATGGT ATCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39129982	mCV22702008	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss148809407	ENSMUSSNP4410654	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				G
ss324292024	CHEV_13_23897753	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29900278					SNP	G	G	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23989867 () rs orientation: forward

Symbol	Name	Function Class
Gm11337	predicted gene 11337	1244 bp upstream
Rr475952	regulatory region 475952	1067 bp distal
Rr475953	regulatory region 475953	719 bp proximal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	1109 bp upstream
Tssr118868	transcription start site region 118868	1102 bp upstream
Tssr118869	transcription start site region 118869	1145 bp upstream
Tssr118870	transcription start site region 118870	1181 bp upstream
Tssr118871	transcription start site region 118871	1211 bp upstream