rs29900801 SNP Detail

Summary

• ID
  rs29900801
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:32955314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACATAA AGAACTCCCA
  TGGGGTGGAA GAGTTGGGGC TGAAAACTCT ATTCTTGGGA CAATGCTCAG TGCTGGTTTT
  GAGAACCAGC ACAGGAGTCA CTCTCAGTCC TCTTCCTGCA TGGGGACTGT GACCAGGCAT
  CCTTCATTTC TGTTGTGGCA AATACACTAA CACAGGGGAG GAAGGGAATT ACTCTGTTTA
  M
  AATTCCAGGT CACCTCTCTC ATCTGGAGGA GCCAAGGCAA GAACCTAAAG CTAGCACATC
  ACATCTGTTG TTAAGAACAA ACAAGAAAAT AAGTGTGTGC TTGTTTGCTG CTTACCCTCT
  GCTAGCTTTA TTCAATCCTA CACAGTCTAA GGTCCAATCC CTCCCATTTG CAATTACCAT
  TCAAAATAAT CCCCCAAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49080337	NES12439985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29900801					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080337	NES12439985	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32955314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D13Mit265	DNA segment, Chr 13, Massachusetts Institute of Technology 265			681 bp distal
Mylk4	myosin light chain kinase family, member 4			Intron
				Noncoding-Transcript-Variant
Rr476892	regulatory region 476892			1756 bp distal
Rr476893	regulatory region 476893			987 bp distal