rs29901847 SNP Detail

Summary

• ID
  rs29901847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:32954516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTAGGA AGTAGCTGTG
  GGGAGGGTGG GGTTGACCCT AATAGAGACA AGAACTCTGA ATAAAAAACG CTCTGGCAGC
  ACAGAAGATG AGTTGGAAGA AAATCCTGAT GTTCAGAGAA GATAGTCCCT CCCTTGTGAG
  GAATCTTGGA TAAATCTGCT TCACTGCTCT TGGGTTTTGA GTTCTCCTTT CAAAGATTTG
  R
  ATAAGCTGGC GTCCAAGGTC CTTCCGCTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTTCTG TCTGTCAGAA AGTAAATCTA GAGTCTTGTG CATTGTAGGC ACACGTTCAA
  CCATAGAGCT GTACCGGAAG TTGAGTTACA ACCAACATGC CCAACAACAC AGAAGATATT
  AACAAAGAAC ACCACCATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49080343	NES12439976	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29901847					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080343	NES12439976	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32954516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D13Mit265	DNA segment, Chr 13, Massachusetts Institute of Technology 265			8 bp proximal
Mylk4	myosin light chain kinase family, member 4			Intron
				Noncoding-Transcript-Variant
Rr476892	regulatory region 476892			958 bp distal
Rr476893	regulatory region 476893			189 bp distal