rs29902639 SNP Detail

Summary

• ID
  rs29902639
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75987790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT GGGGCCTCCT ACCCAGAAAC
  W
  GGTCTGCGCT GTCTCTGCTA CCCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39130201	mCV22680328	ABI	CRAMUS_MOUSE	f	SNP		A	A					T		A
ss52665264	NES15473320	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		T		A		T	A	A	T
ss144639102	ENSMUSSNP5124928	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss324437229	CHEV_13_75977119	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29902639					SNP	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665264	NES15473320	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75987790 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	214 bp upstream
Rr482792	regulatory region 482792	1811 bp distal
Rr482793	regulatory region 482793	within coordinates
Tssr120401	transcription start site region 120401	203 bp upstream
Tssr120402	transcription start site region 120402	226 bp upstream
Tssr120403	transcription start site region 120403	331 bp upstream
Tssr120404	transcription start site region 120404	400 bp upstream