rs29902665 SNP Detail

Summary

• ID
  rs29902665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16190248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAGGAC ACCTTAAAGA
  TACTTCTGCA CAATAAAAGA CAGAGAATGA AAAGGTGGTG GGAAGAATTT AAAAAAAAAA
  AAAGAAAGAA AAAGAAAGAA AAGCCTCAGA AAGAAATTGT TTTAAAGTGC ACACTGGTCT
  TGTTCTGTGA ATACTGTAAT CCTCAATGAA CTCAGCTCTG CTGGTACTTT GAGGAGAAAT
  R
  ACCCAGCCAG GCAGCCCTGC CGTGGATGCT ACACTATGGT CAAGGCTGAC AAGGGGAGGT
  GGGCAAGTAG AAGAACAAAA TGAGAGTAGT TCATGCCAGG GGAAAAGAAT TTGCCAATAT
  ATTTAGAGAT TCGTGCCCTC CAGACCAGTT ACTCACATCA TAAGAGTGCC CTGTTTTTCA
  TGAAAGGATG TGAGAAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39129907	mCV24918749	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss52620148	NES15517506	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss148702950	ENSMUSSNP2380916	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29902665					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620148	NES15517506	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16190248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	1661 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118431	transcription start site region 118431	1255 bp downstream
Tssr118432	transcription start site region 118432	1224 bp downstream
Tssr118433	transcription start site region 118433	1211 bp downstream
Tssr118434	transcription start site region 118434	1190 bp downstream
Tssr118435	transcription start site region 118435	665 bp upstream
Tssr118436	transcription start site region 118436	1021 bp upstream
Tssr118437	transcription start site region 118437	1261 bp upstream
Tssr118438	transcription start site region 118438	1384 bp upstream
Tssr118439	transcription start site region 118439	1401 bp upstream
Tssr118440	transcription start site region 118440	1620 bp upstream
Tssr118441	transcription start site region 118441	1710 bp upstream
Tssr118442	transcription start site region 118442	1956 bp upstream