rs29902757 SNP Detail

Summary

• ID
  rs29902757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13305745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTCTGC GCCCACAGAG
  CATCAAGTAT GAACTGCACT GAACATTTAA ACTACCACAA CTCAGCACCT ACGTCACTTA
  GACAAGGAGT ATGCTGTCTC CTCTGGGAAG TGGAACAGAT TACATGCATC TCCTAAACCT
  GTGGTGTTGG GTAAATATGT TCTAGATATA ATCTTAGCTG TAGTAGCATA TTCTGATAGA
  Y
  GGCCCCCACA TTCCAGCATA TTGGGCAGAG AAAGCGACCT GGAGGGATGG AGCTGTCTGT
  CTGTCTCCAA CATGCTACTT ACCTGGTGAG GATGCAATGT GGCAAGGGCT TGCTTGCTGT
  CACTACAGAG GCTCTTTCTG TTGCTCCAAG ACAAAGCCCA GGACCTTGAT GTGCACAGGT
  AGGTATTTGT GCAACCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394467	NES11492387	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	T	T		C
ss322505558	CHEV_8_13255745	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29902757					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394467	NES11492387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13305745 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	1583 bp upstream
Dcun1d2	defective in cullin neddylation 1 domain containing 2	218 bp downstream
Rr175514	regulatory region 175514	1145 bp distal
Rr186316	regulatory region 186316	1544 bp distal
Tssr80430	transcription start site region 80430	1702 bp upstream
Tssr80431	transcription start site region 80431	1660 bp upstream
Tssr80432	transcription start site region 80432	1626 bp upstream
Tssr80433	transcription start site region 80433	1595 bp upstream
Tssr80434	transcription start site region 80434	1577 bp upstream
Tssr80435	transcription start site region 80435	1557 bp upstream
Tssr80436	transcription start site region 80436	1476 bp upstream