rs29902789 SNP Detail

Summary

• ID
  rs29902789
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32952934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATGCAGCT ATAGCACTTT GGTCAAACTT CTAGTCCCAG
  TAAACCTTAG CTTACTTCTC TGTAGACAGA GAGCTTCATA GGGCCACTGT GTGAAAATTA
  W
  CGAACACACA CACACACACA CACACACACA CACAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA AAGAGACATG GTGTGGGAAG TACTGAGTAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49080355	NES12440156	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29902789					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080355	NES12440156	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32952934 () rs orientation: forward

Symbol	Name	Function Class
D13Mit265	DNA segment, Chr 13, Massachusetts Institute of Technology 265	1590 bp proximal
Mylk4	myosin light chain kinase family, member 4	within coordinates
Rr476890	regulatory region 476890	518 bp distal
Rr476891	regulatory region 476891	640 bp distal
Rr476892	regulatory region 476892	406 bp proximal
Rr476893	regulatory region 476893	1015 bp proximal