rs29904259 SNP Detail

Summary

• ID
  rs29904259
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32887037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTGAGT TAGAATAAAA
  GGTGCATGTC TTGCTGAAGA TCTCTTCCCC AGGCTCAGGG AGAATCCATG CCCGCAACTG
  AAAATGCCTT TCTATGCAGC GTTTTCAACC AGACCTTTGT GTCCCATTTA GCATTTGAGT
  GAGTACCAGC CTGCTGTGGT CAAGGAGGAT TAATGTGTGT ACTGGCTTGT GTTTTTTCCG
  M
  GTGCTCAGTG AAGAGCATCG GCTAAGCTTA GCACAGTAAT AGAACATTGA AGTCAGAGCT
  TCTCCACCTG TCCCAGCTTG TGAGTGTGTA TGTGTGTGTG TATCTTTTTT TATTAAGAAA
  ATAAGAGGAG GAGGAAGAGA AGGATGAAGA AGAGGAATAG GAAGAAGGGG TGGAGGAGGA
  GGAGGAGGAG GAGGAGGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49080578	NES12443404	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29904259					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080578	NES12443404	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32887037 () rs orientation: forward

Symbol	Name	Function Class
D13Cwr2	DNA segment, Chr. 13, Case Western Reserve 2	136 bp distal
Mylk4	myosin light chain kinase family, member 4	within coordinates
Rr283133	regulatory region 283133	1765 bp proximal
Tssr121998	transcription start site region 121998	1328 bp upstream
Tssr121999	transcription start site region 121999	435 bp downstream