rs29904271 SNP Detail

Summary

• ID
  rs29904271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34255194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGCACC CCTGGTTTCC
  AGAGCACTTT CTTGGCTGGT CAGCACCAGA GGTTTTCTTT TTAAGTCTTT CTTCATGTTC
  CACCCAGTTC TCCATGTGTC TGATTCTGTT TCTGGACCCC TTTCTTCTGT ATCCATCTTT
  AACCCAGTCA TATTGTGGCA CACAAGAGTA GTCCAGTTTG TCTTAACACC CAGATGTGAA
  Y
  ATGTCTTAGC CCAGTGCCAA GCTCAGCTTA ACCCCTAATT CCTGTATGGC GACAGTTGCT
  ATCCTGCTTA GTGGTAATGG ACATCCTGTG TGGGCACAAA CAATCCCACC ACATATTTTC
  CTTGAAGGAA AACCACATGG GTGTTTTGGA CACTGCCCTA AAAGTGTATT CTTCAGCAGG
  ACTTTAAACA GGACACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49577898	NES12876659	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29904271					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577898	NES12876659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34255194 () rs orientation: forward

Symbol	Name	Function Class
Tssr28805	transcription start site region 28805	1630 bp upstream