rs29904490 SNP Detail

Summary

• ID
  rs29904490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33109419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCCCTGC CTGAGTCTCA
  GTGCAGCCAG CTCCCCTCGG CAGCATGACT CCTATTGGTG CCTTTTTTAC TGCGTCTTTT
  CAGATGTTCA TCCATTGGCC CAGTCCATGA GTTTGGAGTT TAGCTTCTTT CTTTGTGTCC
  TGACTATAAC TTCCCAATCA AATGCCTGAA CTTACATCCC AGCTTTTGTT TCAAATTCAT
  R
  TGATTTTACA CACGTGTCTA GTTTGGTCTA AGTCAAGTTA CCTGCTTCTC CCCTTCAGCT
  CCACATATAC AAAATACAAA CAAACAAAAC AAATAGCAAA ACAACAAATA AACCAAAAAC
  AATGATGAGT CCTGCATTGC TGGTGGTTTC AAGTTTTTAT AAAAACAGCA AAGAGAGTAT
  GAGAAGGGAG GTTGTATACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49079989	NES12435510	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29904490					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079989	NES12435510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33109419 () rs orientation: forward

Symbol	Name	Function Class
Gm18311	predicted gene, 18311	942 bp upstream
Gm60792	predicted gene, 60792	1272 bp downstream
Rr476932	regulatory region 476932	6 bp distal