rs29905036 SNP Detail

Summary

• ID
  rs29905036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92491066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAAGAA CAGAGGTTAA
  AAAACGCATC CTGGGCCGGC CGGCCAGTCC TCGCCATTCA CCACGATAGA AGTTTCTGGC
  TCGGGTTCCG GCTACCGACT GGAAGCACCA AGACCTCAAA TCTATTACCG CTGGTCGGGT
  AAAAAAGTCA ACTAAAACAA GGACCAGAAG AAGCCGCCAC CTTAAGCCTT CCCTGGCCCC
  R
  CCCCTTAGCC CTACCCACCA TTAATAAGCT CTCCATAAGG CCTCCGCTTC CGGCCACGAC
  GGCTACGCAC CCGCCCCACC CTGACCCCGC CCCTAGCGGT CCGGCCCCAC CCCGCCCTCT
  AGCTCCGCCC CGTCCCAGAC AGAACCCGCC CGGGACGGCC TTCGCCTAGG TGGACGCTAG
  GGGCGCCGCG GAGCCGTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39130522	mCV23768868	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29905036					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92491066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	within coordinates
Dhfr	dihydrofolate reductase	225 bp upstream
Gm19308	predicted gene, 19308	1792 bp downstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	within coordinates
Rr483661	regulatory region 483661	within coordinates
Rr483662	regulatory region 483662	20 bp distal
Rr483663	regulatory region 483663	109 bp proximal
Rr483664	regulatory region 483664	417 bp proximal
Tssr120622	transcription start site region 120622	190 bp upstream
Tssr120623	transcription start site region 120623	581 bp upstream
Tssr120624	transcription start site region 120624	628 bp upstream
Tssr120625	transcription start site region 120625	654 bp upstream
Tssr120626	transcription start site region 120626	681 bp upstream
Tssr123429	transcription start site region 123429	38 bp upstream
Tssr123430	transcription start site region 123430	385 bp downstream