rs29905144 SNP Detail

Summary

• ID
  rs29905144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32886445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAGCTA TCTTCAGGCT
  CTTTCTTTCT AAACAGCACA TGTGCTGCGG CTCCAAGCAG CTTTGGTAGA ACTAAGAAGC
  CTCTTGTGCC CAAAGAGCGT GGAGAAGAAG ACAGCACCCC AAATCCCGAT GACCTCTTGG
  AAAAGTAGAT GACTGGGGCC ACAGAGCTGG CATCTGCATT GATTGGCCAG CTTTGCAAAG
  Y
  CCCTTTCCCA TCAGAGCCGA CATCATAGGC TTTCACTGAG CAGCCTCCCG TGGGTGTGGA
  TCGAGGGGAC AGACAAAGCC AGACTAACCA TCTCCTGCAG CACTGTAACT CAGCCTGTAA
  TCCTCAACTT GGCGACTGAA CTCGCCTCAG CTTGTGCATA AAACGATCTT GCTGGAGCGG
  GGTACCCACC TTCCTATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49080583	NES12443391	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29905144					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080583	NES12443391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32886445 () rs orientation: forward

Symbol	Name	Function Class
D13Cwr2	DNA segment, Chr. 13, Case Western Reserve 2	313 bp proximal
Mylk4	myosin light chain kinase family, member 4	within coordinates
Tssr121998	transcription start site region 121998	736 bp upstream
Tssr121999	transcription start site region 121999	1027 bp downstream