rs29905147 SNP Detail

Summary

• ID
  rs29905147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32885016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGCCAA GGCTTCTTTA
  TTGAATAATT TAAGTCACTA ACAAACATAA ATAACAACAA AGAAAATAAT ATAGTTCTTT
  AATATAATAC ACATATATGA CTTACAGTGC ACGTTCATAA GGCAAAGAAG TAAAGCCAAA
  TGTTCCTACT ACGTTCAGAA ATAAAAATAT ACATGACAGT CACTACACAA TCCACTTTTA
  R
  TTCTGATCTG CATGAGTGAA CCTCTTCAGA AGGACACACT GACATCTGTC AGCTAGGGTG
  AAAGCAAAAT GCACACATGT CCAACTTCTC CACACACGGG TTAGGTATCT GTTGTTCTTT
  TGAATGTGCT TAAGCCTTCA ATATATAAAG ATCATTTATA GAAACACACT TCACCAGAAT
  GGAGCAAAAA GATATGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
ss49080586	NES12443538	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G		A	G
ss148850628	ENSMUSSNP2524741	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
rs29905147					SNP	A	A	A	A	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080586	NES12443538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32885016 () rs orientation: forward

Symbol	Name	Function Class
D13Cwr2	DNA segment, Chr. 13, Case Western Reserve 2	1742 bp proximal
Mylk4	myosin light chain kinase family, member 4	within coordinates
Tssr121998	transcription start site region 121998	674 bp downstream