rs29905149 SNP Detail

Summary

• ID
  rs29905149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32884288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGTGTC AGGTCCTTGA
  GATTTCGCAC TAAGAACTTG TTCCTGATGA AGAATGGGTC CATGAACACT GATGTGGTTG
  GTGAATGCAG CTTCTTCCTT GTGTGAAACA AGTCAGTTGA CTCACCTAAA GGGCTAGGCC
  TGAGAGACTG GGTTCAAGAG GGACATGATA TTACTCTAGT GAAAAAACAT AAGCCTCTAC
  Y
  TCCACCTGAT AAAGGGACCA GAAAATGCAT GCCCCTGGGT ATGGACTTCA CAGCTTAAGG
  GCACAATGCT ACAGGTCTCA ACCAGTTCTG AGTTACTCCA ACCATGCATA CACATTTGGG
  AGCTGAACAC GCTCTTTAGA ATAGACACTC AAGGCTAGAA GGCATCACCG CAGCCTATGG
  CAGGGTAGCT ACTCGGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
ss49080588	NES12443536	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		T	C
ss148850590	ENSMUSSNP6571974	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
rs29905149					SNP	T	T	T	T	T	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080588	NES12443536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32884288 () rs orientation: forward

Symbol	Name	Function Class
Mylk4	myosin light chain kinase family, member 4	522 bp downstream
Tssr121998	transcription start site region 121998	1402 bp downstream