rs29905336 SNP Detail

Summary

• ID
  rs29905336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52937909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCCCAA GCAGGCTCTC
  ATTTTCCAGA CCACAGAGGA TGGGCAGGAA AGACTGGATT TGAACAAAGC CCAGTTAGGA
  TAAACAAGCC CTCCCTGAAT GTTTCCCTGT CTCATCAGCA CTGTCCAGAA GGAGGCTAAG
  TATTCCCTCA TCATATTACT TATAGCAAAT ATTTGATTAA AATCTAATTT ATGAAAAAGC
  Y
  ACTCTCTGGC CCTTGTCCTG ATCCCAGTGC TTGGCTGCTA GGGTTTACAA CAACACTGGA
  GGACACCAAT AAAGCTCTAC TAAGGCCACA GAAGACGTCT CATGAGTAGG CTAGGTACAG
  AAAACACAGA GGTCGGCACT TTAGACGCCT CTCCACGTAG GTGAGACAGA GGGATTACAG
  GCCCAGGGGA TTCTGATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47892606	NES11645873	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T		C	C	T	C
ss133191933	ENSMUSSNP5507130	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29905336					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47892606	NES11645873	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52937909 () rs orientation: forward

Symbol	Name	Function Class
Jazf1	JAZF zinc finger 1	within coordinates
Rr630519	regulatory region 630519	784 bp proximal
Tssr61049	transcription start site region 61049	799 bp downstream