rs29905342 SNP Detail

Summary

• ID
  rs29905342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52938439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCTTAGG TGCATTTATG
  ACACAGCACT TGATATGCCT TACATTACAT GACTAAATCC TGTGAATTCA CTCATTTCTA
  AGAAAATCCC AGAGAGCTGG AAATCAGGTC CCCAACTCAG AGCTCTGTAA CAGACTGAGG
  ACACTGTGGC TCCATCAATG TCTCAGCCGA CCAGTCATCT GATGACCACT GTGTGCAGTG
  R
  TTACCTGTAA ACTCTACCCT GTCAGTGGGA TTGAGAGGCA CAGGCATTTA CAGTTGATTT
  CTAATTTAAA TCCAATGTCC TTTCCAGTCT GGTTTTTACA TTTTATGTGC CTCTCTCACA
  CCAACAAGGG AGAAATGAAT TTAGCTTTGA CTCACCTGGT TTAGAAATAA GACAAGTGGC
  TGATGGAGTT TTGCCCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47892612	NES11645876	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29905342					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47892612	NES11645876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52938439 () rs orientation: forward

Symbol	Name	Function Class
Jazf1	JAZF zinc finger 1	within coordinates
Rr630519	regulatory region 630519	254 bp proximal
Tssr61049	transcription start site region 61049	269 bp downstream