rs29905407 SNP Detail

Summary

• ID
  rs29905407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33108418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAACAGT TTGCCACACC
  TGTAGACTCA TCAGGCTGAA TGCTGGATAT TGAATACTTG AGGTGAAATA GCAATCAAGA
  ATAGCAGACA TGTCATCGAT TCTTCTTCAG AGAGTGCCGT TAGATTAAAA AAGTTGCCAT
  CAATTCCATG ACAAATTCAT CTCTGATCAT AACTTGATCA ATGTCTTTGG CTGCTGGCAA
  Y
  AGTAAATCTC CAGTGTTGGT GTGACATTTC ATAGTTCTGT CAATTCTGAG TGACAGAATT
  CAAAGCTTCT CAGCTTCAGT AAGTTGGAGA AGACAGTACA GTGTGTGTGA CTTTGGGTCT
  CAGACCTAAG GAGACCCAGG TCAAGAGCCT GGTCCTGGTA GGGTTTTGTG GCCTTCCTCA
  GGAAAGAGCA CTTAAGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49079996	NES12435499	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29905407					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49079996	NES12435499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33108418 () rs orientation: forward

Symbol	Name	Function Class
Gm18311	predicted gene, 18311	within coordinates
Gm60792	predicted gene, 60792	271 bp downstream
Rr476931	regulatory region 476931	1398 bp distal
Rr476932	regulatory region 476932	93 bp proximal