rs29905571 SNP Detail

Summary

• ID
  rs29905571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13854040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGGCTTG GAGAGTTGGC
  TTAGTAGTTG AGAGCATTGG GCTGCTCTTA TAGGAGACCG AGGTTCAACT CTCAGCACCT
  ATATAGTGGC CCACAGTCAT CTGCAGTTTC AGTTCTAGGG CATCTGATAG CCTTTCCTGG
  CCTCTGCAGG CACCAGAAAC ACAGTTTATA CATGTAAATG CAGATAAGAC ATCCATATAC
  R
  TAAAATAAAA GTTAAAATAA AGTTATTTAA AGTAGCACTC AATAGTTTTG CTATTTCATA
  CTGGCATTTT GTGTATTCAA TTTAATCTTA AGTCTTTCTC ATATATTGCT TTATATCAAT
  TTACCAGTAA AGTCTATTTC ACAAAAATTA TAAGAATCAT GTAGTTTATT GGAATTCTTT
  CCTGCGGTGT AGTATCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39130327	mCV22281267	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148688909	ENSMUSSNP4870519	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29905571					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13854040 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr282634	regulatory region 282634	1440 bp distal