rs29906168 SNP Detail

Summary

• ID
  rs29906168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52938667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGAGAG GCACAGGCAT
  TTACAGTTGA TTTCTAATTT AAATCCAATG TCCTTTCCAG TCTGGTTTTT ACATTTTATG
  TGCCTCTCTC ACACCAACAA GGGAGAAATG AATTTAGCTT TGACTCACCT GGTTTAGAAA
  TAAGACAAGT GGCTGATGGA GTTTTGCCCC AGGTTTCCTG GGACACTCCG GGCTTACTTC
  R
  CAGCACTTAA CCATAGAGCT ACATGTCCAA GTTACAGCAT ACACACTAGT TTTGGGAGAA
  AGGTCCCACT GCCTCTATGC TCCATCCCTC TGACCTATAG CCTAGAGCCT GGAACAACGC
  CAGAGTCCAA GCTCCTCCTA GCATTCACTC TGGACTGCTC TGGCTGCCCT TCTTTTCCTG
  CAAAGAACAC TGTGTAATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47892618	NES11645879	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29906168					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47892618	NES11645879	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52938667 () rs orientation: forward

Symbol	Name	Function Class
Jazf1	JAZF zinc finger 1	within coordinates
Rr630519	regulatory region 630519	26 bp proximal
Tssr61049	transcription start site region 61049	41 bp downstream