rs29906279 SNP Detail

Summary

• ID
  rs29906279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111886217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATCCTA AAAATCTCTG
  ACACTGAGTG AATGCACACA CCCATGATCC CTTTCTGTCT AGAGACAATG AGTGGACGCA
  CTCACATCTT ACAAAAGTGA CACCCTTTTT CACCTTCTCA AGTGTAATCA CTCACTGTTT
  TTGTTTTTCC TTTACAGGGA GAGGGGGAAA AAAAAAGCCA AACATTTCTG TTAAATACAG
  Y
  TAGTTCAGGC TTTAAGTATT TTACCCACGG TGCAATGCCT GGTCCTGAGT TTGACCACAC
  AGAATAAATT CCTTATAAGG AGCACAGAGA AGTCAAAAGG AGTGCACTTA AAAATGTGGG
  GAGTGGAGCA GGGCTTGGTG GGGCACGCCT GTGATTCCAG CACTCAGGAG GCAGACATAG
  GCAGATCTCT GTGTTTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39130725	mCV24613948	ABI	CRAMUS_MOUSE	f	SNP	T	T	C			T		T
ss51156725	NES14327279	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T		C	T	T	C	C	C
ss145218872	ENSMUSSNP2365359	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29906279					SNP	T	T	C	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51156725	NES14327279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111886217 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Tssr124031	transcription start site region 124031	1456 bp upstream
Tssr124032	transcription start site region 124032	1245 bp upstream