rs29906400 SNP Detail

Summary

• ID
  rs29906400
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13302707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCGAGA CAGGGTCTCT
  CTGTAGCCCT GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTAGCCTTG AACTCAGAAA
  TCTGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCG TGCGCCACCA CGCCCGGCTT
  CTGACTGTAG TTTTAAGTCC TGTTCTCCAG AGGTTGTGAG CTGTGGTGTG CTCTGAGCTG
  W
  ACTATCGACC ATAAAAGCAG ATAAGTATGC CCCCAAAATA TGAGAGGAAA TAAAGATTTG
  GAATTCATAA TACTTTCGAA GCATCTCGAT CCCCGTAGTG TGGTGAAAGC ACCTCAGCAG
  TGTGCTTTCT TCTGCCTCGT TATTCAGGGG CAAGTTGATG ATATTCCTAT ACAATGACCA
  CAGAATCCAT AAATACCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394410	NES11492506	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		A	T	A	A		T
ss322505529	CHEV_8_13252707	CHEVERUD	SCREENING_POP	f	SNP									T					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29906400					SNP	T	T	T	T	T	T	T	T	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394410	NES11492506	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13302707 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Tssr80430	transcription start site region 80430	1325 bp downstream
Tssr80431	transcription start site region 80431	1361 bp downstream
Tssr80432	transcription start site region 80432	1397 bp downstream
Tssr80433	transcription start site region 80433	1414 bp downstream
Tssr80434	transcription start site region 80434	1447 bp downstream
Tssr80435	transcription start site region 80435	1469 bp downstream
Tssr80436	transcription start site region 80436	1539 bp downstream