rs29906617 SNP Detail

Summary

• ID
  rs29906617
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74535046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC GAGGCCTCCT GGGAGTGACC
  W
  CCCCGCCTGG CCCAAGGCTA AGGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45374203	mCV23154355	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	T
ss146763750	ENSMUSSNP5827187	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320348118	CHEV_2_74542759	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29906617					SNP	T	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74535046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	within coordinates
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	1264 bp downstream
Hoxd8	homeobox D8	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr559361	regulatory region 559361	1655 bp distal
Rr559363	regulatory region 559363	453 bp distal
Rr559364	regulatory region 559364	77 bp distal
Rr559365	regulatory region 559365	within coordinates
Rr559366	regulatory region 559366	28 bp proximal
Rr559367	regulatory region 559367	45 bp proximal
Rr559368	regulatory region 559368	1659 bp proximal
Tssr18420	transcription start site region 18420	157 bp downstream
Tssr18421	transcription start site region 18421	54 bp downstream
Tssr18422	transcription start site region 18422	123 bp upstream
Tssr18423	transcription start site region 18423	159 bp upstream
Tssr18424	transcription start site region 18424	215 bp upstream
Tssr18425	transcription start site region 18425	344 bp upstream
Tssr18426	transcription start site region 18426	384 bp upstream
Tssr18427	transcription start site region 18427	443 bp upstream
Tssr18428	transcription start site region 18428	476 bp upstream
Tssr18429	transcription start site region 18429	638 bp upstream
Tssr18430	transcription start site region 18430	1036 bp upstream
Tssr24623	transcription start site region 24623	1113 bp downstream