rs29907092 SNP Detail

Summary

• ID
  rs29907092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13303066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATATTCCT ATACAATGAC
  CACAGAATCC ATAAATACCT GCGTTTCATC ATGAGGTACA CTCAGAAAGA TGCTTCACCA
  TTTTCAACAA GCTGTGACAC CATATCTTAT CAATGTGTGT CTGCTCTATT TAGAGACACG
  GCATTGGTGG CATTCCTATA CAGTGACCAC AGAACTAAGC TGGGCGTGCT CACGACAGAC
  R
  GACAGAGCAG GGAATGCGTA TGTGGGGTCT GTTGGCTCAA CTGCTGGCCT CAGGCCTCAG
  TTTTGCAACG ATGGCATGCC AGACCTGCAG GGTATTACCA TCACACTGTG TCGAGAAAAG
  ACACACGGCG CTTGTATATG GGCGCGTCTC TGAAATCCAG GTAACATTTT GTTGATTTTA
  GCTCCTTAGG AAACAAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47394422	NES11492510	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		A	G	A	A		G
ss322505531	CHEV_8_13253066	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29907092					SNP	G	G	G	G	G	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47394422	NES11492510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13303066 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Rr175514	regulatory region 175514	935 bp proximal
Rr186316	regulatory region 186316	within coordinates
Tssr80430	transcription start site region 80430	966 bp downstream
Tssr80431	transcription start site region 80431	1002 bp downstream
Tssr80432	transcription start site region 80432	1038 bp downstream
Tssr80433	transcription start site region 80433	1055 bp downstream
Tssr80434	transcription start site region 80434	1088 bp downstream
Tssr80435	transcription start site region 80435	1110 bp downstream
Tssr80436	transcription start site region 80436	1180 bp downstream