rs29907173 SNP Detail

Summary

• ID
  rs29907173
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162694132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGCATG GAGCGACAGT
  GGAAAACAGG CTAACTCGCC AATTTTATTG CTGCCTTTTG TTGTTGTTTT AATGAAGCAT
  TTTTAATTTT TTTTATTATA CAGGGTTCCA TAAGGCCTCC TGCAAGCATA GAATGGCTTT
  GAACGTATTC CCCTGAGACC GCACTACACT GCCTCTTCTG CTCTCCCCAC CATGGGTCCC
  S
  TTTGTTCCCC GGGCTGTTGT ACTTCTGCTT TGATGTCCTT ACTAGATTTT ATGCATCTAT
  AAAGTCTAAA TTCTCTATGA TAATCCTCCC TCCAGGCACC TGGAGCCCAT ACCCGATCCT
  CAAATCCCCA CCAAGTGGCA GGATGCCTTT CCGTTGTTAG AGGAAAATAT TTCATACACA
  GTGAGTCAGA GCATGAGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45374812	mCV23584499	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	G
ss148198879	ENSMUSSNP6918833	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320602587	CHEV_2_162677948	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29907173					SNP	C	C	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162694132 () rs orientation: forward

Symbol	Name	Function Class
Rr569228	regulatory region 569228	1256 bp proximal