rs29908496 SNP Detail

Summary

• ID
  rs29908496
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150881804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGAGT GTGCCCACCA
  ACCTCGGAAC CTAGCTGCCC GGTGACTTTA GCGCTTCACT TCTTGCCCAC AGCCTTGTAG
  GAACTAGAGC CTTCATCTGA ACATCCTTTG AAAGATGCTT AGAAGAACTG AAGAGAAATG
  GGAGTCTCTG CAGTGTCTGC CGAATGGTTG TTCTTAAAAA TGTGTATTTG TGTTTCTGTG
  K
  ACGTGAGTGC CTGCAGAGGA CAGACGAGGT CGTCCTGGAG CTGCAGTTGC GGCGGCTGTG
  AGCTGCCCAC TGTGGGTGCT GGGAACTTGG GTCCTCTACA AGAGCAGTAT GAGTTCTTAA
  CCAGTGAACC ATTTCTCCAG CTCCTTTCCC TCCATCTTTA CTCATTTTTC TGAAACTCTG
  CAGCCCAAGT CTTGTGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45373977	mCV22554906	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss147953184	ENSMUSSNP3332180	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29908496					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150881804 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	within coordinates
Cpgi12417	CpG island 12417	8 bp distal
Nanp	N-acetylneuraminic acid phosphatase	505 bp upstream
Rr397387	regulatory region 397387	268 bp downstream
Rr567146	regulatory region 567146	497 bp distal
Rr567147	regulatory region 567147	415 bp distal
Rr567148	regulatory region 567148	within coordinates
Tssr20713	transcription start site region 20713	367 bp downstream
Tssr26734	transcription start site region 26734	481 bp upstream