rs29908525 SNP Detail

Summary

• ID
  rs29908525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30281079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGACCAC GTCTCACACC
  TCTTTCTTTC AAAGGCTAAT AATGACTTTG CCTGAGAGAG AGAGCTAAGG GCAGGTGACT
  AGGAGGTGGG CCCAGCTGGA TAAGTTCAGG CTGGGTAGGG AGACGGAAGA CAAGCTGAAC
  ACCACTGGGG GATTCTGAGT CCCCAGCCTA CTTAGAGTAA CCTACAATTC TGGCTTCCAC
  R
  GGCTGCCAGA CTAAGCCACT GTAGCTAGTG ACCTCAGAAC ATAGAATATG GAGGGCCAAG
  GCTCCAACCT AGACCTACTG GGTACCCCCA GGTCTAAGGC AGACCCGGAA CCTGCTTTTA
  TTTTTATTTT TTTACTGTAC ATGCTCTGGG CCTTAGTCAG AGGTCAGAGA ACCGTTGCAT
  ACTGGCAGAG GCAGACAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45374533	mCV23155802	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29908525					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30281079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11435	CpG island 11435	909 bp proximal
Dolpp1	dolichyl pyrophosphate phosphatase 1	1187 bp upstream
Gm75227	predicted gene, 75227	within coordinates
Rr396863	regulatory region 396863	1119 bp upstream
Rr554303	regulatory region 554303	1858 bp distal
Rr554304	regulatory region 554304	697 bp proximal
Rr554305	regulatory region 554305	1198 bp proximal
Rr554306	regulatory region 554306	1316 bp proximal
Rr554307	regulatory region 554307	1360 bp proximal
Tssr17111	transcription start site region 17111	1194 bp upstream
Tssr17112	transcription start site region 17112	1338 bp upstream
Tssr17113	transcription start site region 17113	1380 bp upstream