rs29908788 SNP Detail

Summary

• ID
  rs29908788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152536183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA TCCTGTTGGA ATTTGTCACA
  Y
  CTGGTGTCAT TCTCCCACTG TCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45375190	mCV27576184	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss147971987	ENSMUSSNP383428	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320563175	CHEV_2_152519999	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29908788					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152536183 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			982 bp downstream
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567432	regulatory region 567432			412 bp distal
Rr567433	regulatory region 567433			822 bp distal
Rr567434	regulatory region 567434			470 bp proximal
Rr567435	regulatory region 567435			1891 bp proximal
Tssr20823	transcription start site region 20823			723 bp upstream
Tssr20824	transcription start site region 20824			1195 bp upstream
Tssr20825	transcription start site region 20825			1244 bp upstream