rs29908873 SNP Detail

Summary

• ID
  rs29908873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32738394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCGAGTG ACTTGTGTGT TTTTGATATT TAGAGTGGGT
  TACTTTGACT CTCCAGCCCT TTGCTGTCCT TAAACAGATG GACCACATGC CATCTAAAAA
  Y
  ATACACATAT ACAATGTTCA TATTTATTAT AAAGTATCTT TGTGGTTACA GTGCTTTATG
  AGTCTCAGAA TTTGGGGACT GGGTTGGATG TTCAGCTCAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49080992	NES12424594	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29908873					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080992	NES12424594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32738394 () rs orientation: forward

Symbol	Name	Function Class
D13Cwr6	DNA segment, Chr. 13, Case Western Reserve 6	17 bp distal
Rr275656	regulatory region 275656	194 bp distal
Rr278919	regulatory region 278919	262 bp proximal
Rr278920	regulatory region 278920	600 bp proximal