rs29909123 SNP Detail

Summary

• ID
  rs29909123
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144111660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAAGGTA CTTAAAATGA AATCTTAATT CAGCTCTTAT
  TAAAATCTAA GAGCTCCCAT ATTACTGACG ATTTTGTCCA CAAAACTGAC TCATAACCTA
  M
  CTGTGCGGTG GAAAATTCAA GTTTAAAGAG CCAATAAAAG TAGAATCCTT TATTGCCCGT
  ATAGCAATCC CTGTTTATTG CATTAGTCCT CAAGATATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45374363	mCV22516068	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss147789049	ENSMUSSNP2022032	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs29909123					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144111660 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			376 bp proximal
Mgme1	mitochondrial genome maintenance exonuclease 1			1164 bp upstream
Rr397362	regulatory region 397362			1011 bp upstream
Rr397363	regulatory region 397363			1676 bp upstream
Rr566423	regulatory region 566423			1549 bp distal
Rr566424	regulatory region 566424			228 bp distal
Rr566425	regulatory region 566425			74 bp proximal
Rr566426	regulatory region 566426			822 bp proximal
Rr566427	regulatory region 566427			1212 bp proximal
Snx5	sorting nexin 5			Intron
				Noncoding-Transcript-Variant
Tssr20524	transcription start site region 20524			834 bp upstream
Tssr20525	transcription start site region 20525			882 bp upstream
Tssr20526	transcription start site region 20526			1138 bp upstream
Tssr20527	transcription start site region 20527			1271 bp upstream
Tssr20528	transcription start site region 20528			1888 bp upstream
Tssr26594	transcription start site region 26594			326 bp downstream
Tssr26595	transcription start site region 26595			700 bp downstream
Tssr26596	transcription start site region 26596			764 bp downstream
Tssr26597	transcription start site region 26597			1040 bp downstream
Tssr26598	transcription start site region 26598			1096 bp downstream
Tssr26599	transcription start site region 26599			1112 bp downstream