rs29909547 SNP Detail

Summary

• ID
  rs29909547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32126383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTATTA CCCATTTCTC
  AGAGTAAAAA TAAGCAAAAA AGCATCTGCA TTTCAGTGTG ACACAACCAC AGAGACCTGC
  TTACATAGCA CTTGTGCTAA TTCAGAGAGA ACAACTTCAG TGAGTTTCTC CTGTCAACTG
  CTGTTAAGAG TAGAAACCAG TTTCTCAAAC CAGTGAGCTA GCCCAGTTTC TCTTATAAAA
  R
  GTCATTACAA GTTTAATTCC TATTCATTCA TTCATTCATT CATTCATTCA CAACCTTTTA
  ACAAAAAATT TATATATTAT TTCCTTTAAA GTTATTTCTA TGGGTAATGC CTTTGGTTCA
  CTACTGTTTT ACATCATATT TGTGATCTGA GGAGAAGAAA AATTCAGATA AATTTCCATG
  CCTTGTAGCA CATTTGGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49082438	NES12429048	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29909547					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49082438	NES12429048	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32126383 () rs orientation: forward

Symbol	Name	Function Class
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Rr275635	regulatory region 275635	618 bp proximal