rs29909551 SNP Detail

Summary

• ID
  rs29909551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32125966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTATATA TCCTACTCAT GAAACAATAA AGTAGATTTG
  TCTCTCTGAA GCCGCCTCCA GAAGTAATTT AGTCATCACA GCCACCCAAA CCTTGCTTGC
  Y
  ATTTGTCCAT CCACCATCAT GGACCAGTGG CCAACAACCT CCAAGAAGAA GGGAGACCCA
  CATAGCTGGA CTCTGAAAAG AACATGTTAA TATTTCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39133607	mCV23989473	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss49082442	NES12429044	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	T	C		C	T	T	C		C
ss148842906	ENSMUSSNP4499029	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss324310992	CHEV_13_32033852	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29909551					SNP	T	T	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49082442	NES12429044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32125966 () rs orientation: forward

Symbol	Name	Function Class
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Rr275635	regulatory region 275635	1035 bp proximal