rs29910373 SNP Detail

Summary

• ID
  rs29910373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162896796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGTGCGA CCAGACCTGC
  AGACACGCTG ACGCCTGAGA GCACCGCCTG GGGCCCGGAG CGGCTCGAGC AGCCTGAGTC
  CTGACCCCGG CCCGGCTCCC GCTCCGGGCT CGGCCGGCGG GCGTAAGGGT GCGGCGGGGT
  CCGGGCCGGG GGGATGTCTC GGCGGACGCG CTGGTGAGAG GCTGCGGGCG CGCTGGGGTC
  Y
  TCTCCCTTCT CCTTGGGTCG GCAAGCGTGA GATGGGGATC CCCGGGAGAA ATGCACCCTG
  CGCCGCCCGA TGCAGGGGCG CGCGCCACGT TAAGAGGCTA TCGGGACCCC CTCGCTCGGT
  TCCTGGGCCT CCTGGGCCCG GGAGTCTGAA AGCGCGGGTT CCCCCTCTAG ACCGGGTCCC
  AGCCCTGGGT GAGGTCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45374669	mCV22752354	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148201562	ENSMUSSNP1914568	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29910373					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162896796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	within coordinates
Gm75254	predicted gene, 75254	462 bp upstream
Mybl2	myeloblastosis oncogene-like 2	Intron
Rr374192	regulatory region 374192	1618 bp downstream
Rr397459	regulatory region 397459	216 bp downstream
Rr569271	regulatory region 569271	473 bp distal
Rr569272	regulatory region 569272	179 bp distal
Rr569273	regulatory region 569273	within coordinates
Rr569274	regulatory region 569274	1828 bp proximal
Tssr21431	transcription start site region 21431	293 bp downstream
Tssr21432	transcription start site region 21432	227 bp downstream
Tssr21433	transcription start site region 21433	199 bp downstream
Tssr21434	transcription start site region 21434	183 bp downstream
Tssr27277	transcription start site region 27277	456 bp upstream
Tssr27278	transcription start site region 27278	422 bp upstream